PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-X1
Protein Properties Length: 1120aa    MW: 120897 Da    PI: 8.1874
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.93.7e-07444461118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+Cq+ CH G+C pC
  XP_016451170.1 444 CGVHRCQAVCHSGDCAPC 461
                     ****************** PP

2zf-NF-X118.64.1e-06540558119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  XP_016451170.1 540 CGQHSCESLCHSGHCPPCL 558
                     ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.41E-7143214No hitNo description
PROSITE profilePS500168.831152213IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590155210IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.48155211IPR001841Zinc finger, RING-type
CDDcd060084.50E-6244305No hitNo description
SMARTSM004380.023267285IPR000967Zinc finger, NF-X1-type
PfamPF014228.4269284IPR000967Zinc finger, NF-X1-type
CDDcd060083.90E-12312360No hitNo description
PfamPF014227.7E-4322339IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018322341IPR000967Zinc finger, NF-X1-type
CDDcd060083.32E-8376421No hitNo description
PfamPF014226.2E-4386403IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0066386405IPR000967Zinc finger, NF-X1-type
CDDcd060081.36E-13434482No hitNo description
PfamPF014221.9E-6444461IPR000967Zinc finger, NF-X1-type
SMARTSM004383.2E-5444463IPR000967Zinc finger, NF-X1-type
PfamPF0142218502513IPR000967Zinc finger, NF-X1-type
SMARTSM00438190502536IPR000967Zinc finger, NF-X1-type
CDDcd060084.31E-9530582No hitNo description
PfamPF014221.0E-4540557IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4540559IPR000967Zinc finger, NF-X1-type
CDDcd060086.00E-5587635No hitNo description
SMARTSM004380.34597615IPR000967Zinc finger, NF-X1-type
PfamPF014225.6E-4650665IPR000967Zinc finger, NF-X1-type
SMARTSM004380.022650680IPR000967Zinc finger, NF-X1-type
PfamPF014224.5682708IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021689710IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.0E-4929974IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MSFSSAQNNR RNNNSNRPGN NPVQSARREW LPRGSTATTA VSAAPVTTTV TTTVVSPVFN  60
LNGSSSAGNG REKDNVSAAP VNRRNQTYVG PNLNKGPTYA RRERGRENHN YQANRVERAV  120
NGRINQGEHT RLKDPNLPQL VQEIQEKLLK GNIECMICYD MVRRSAPVWS CSSCYSIFHL  180
NCIKKWARAP TSVDMSAEKN QGFNWRCPGC QSVQLTSSKE IRYICFCGKR PDPPSDLYLT  240
PHSCGEPCGK KLEKELPGHD LSEEDLCPHV CVLQCHPGPC PPCKAFAPAR SCPCGKEVIT  300
TRCSDRKSVL TCGQQCGKLL DCGRHRCEQT CHVGPCGHCQ VIVNAYCFCK KKTEVVLCGD  360
MGVKGDIKIE DGVFSCSSAC GRKLSCGNHI CLELCHPGPC GDCALLPSKV KTCCCGKSSL  420
EDERHSCLDP IPTCSKVCGK SLRCGVHRCQ AVCHSGDCAP CLVPVTQRCR CGSTSRTVEC  480
YKTQAEVEKF TCDRPCGQKK NCGRHRCSER CCPLSNPKNS VTGGWNPHFC SMPCEKKLRC  540
GQHSCESLCH SGHCPPCLET IFTDLTCACG RTSIPPPLPC GTPSPSCQLP CSVPQPCGHP  600
PTHSCHFGDC LPCAVPVAKE CVGGHVILRN IPCGSKDIRC NKLCGKTRQC GLHACARTCH  660
SSPCDFSAGP SNGSRASCGQ TCGAPRRDCR HTCTALCHPS SPCPDVRCEF PVTITCSCGR  720
VTANVPCDAG GPIVDSVFEA SIIHKLPSPL QPIEINGKKV PLGQRKLTCD DECAKMEKKK  780
VLSDAFGITP PNLEALHFGD AAVSEVLGDL LRRDPKWVLS IEERCKCLVL GRSRGGVNAL  840
KVHVFCPMLK EKRDAVRLIA ARWKLSVNAA GWEPKRFITV HVTPKSKAPA RILGAKGCTV  900
NNIAQPAVFD SLVDMDPRLV VALFDLPRDA DISALVLRFG GECELVWLND KNALAVFSDP  960
ARAATAMRRL DQGSAYCGAS VVPQSGVASA VTSATNAWGV SGAAKDGGGA AALKGNPWKK  1020
AVVQEPHLRE SPWDPEEWSK NPTDSAPSAW RTNEATTAAS SNRWSVLEPE MTSNLPRASI  1080
TIKEPVTEPG VGGSALPPKP QDVGVDEMAD VVDDWEKAYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767499.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_016451170.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1